Description

AMPlify is an attentive deep learning model for antimicrobial peptide prediction.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

faa{:bash}

:file

amino acid sequences fasta

*.{fa,fa.gz,faa,faa.gz,fasta,fasta.gz}

model_dir{:bash}

:directory

Directory of where models are stored (optional)

Output

name:type
description
pattern

tsv{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.tsv{:bash}

:file

amino acid sequences with prediction (AMP, non-AMP) and probability scores

*.{tsv}

versions_amplify{:bash}

${task.process}{:bash}

:string

The name of the process

AMPlify{:bash}

:string

The name of the tool

AMPlify --help 2>&1 | sed -n 's/AMPlify v//p'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

AMPlify{:bash}

:string

The name of the tool

AMPlify --help 2>&1 | sed -n 's/AMPlify v//p'{:bash}

:eval

The expression to obtain the version of the tool

Tools

amplify
GPL v3

Attentive deep learning model for antimicrobial peptide prediction

github.com/bcgsc/AMPlify 10.1186/s12864-022-08310-4
included in
funcscan
maintainer
Github user louperelo
get in touch
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