Merges the annotation gtf file and the stringtie output gtf files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gtf{:bash}
:file
Stringtie transcript gtf output(s) to be merged together.
*.{gtf|gff}
meta2{:bash}
annotation_gtf{:bash}
Reference annotation gtf file (optional).
*.{gtf}
versions_stringtie{:bash}
${task.process}{:bash}
:string
The name of the process
stringtie{:bash}
The name of the tool
stringtie --version{:bash}
:eval
The expression to obtain the version of the tool
merged_gtf{:bash}
${prefix}.gtf{:bash}
A unified non-redundant set of isoforms from the provided gtf files.
${prefix}.{gtf}
versions{:bash}
Transcript assembly and quantification for RNA-Seq
