- Installation Install nf-core/tools
- TUI Explore commands graphically
Pipelines
- create Scaffold new pipelines
- list List pipelines
- launch Launch pipelines via TUI or GUI
- create params file Create parameter files
- download Download pipelines and dependencies
- licences Print software licenses
- rocrate Create RO-Crates
- lint Lint pipelines
- schema Build schema files
- bump version Bump pipeline versions
- sync Sync pipelines with template
- create logo Create pipeline logos
Modules
Subworkflows
Test datasets
- list List test dataset files
- list branches List test dataset branches
- search Search test dataset files